STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA2_2736NAD binding domain of 6-phosphogluconate dehydrogenase family protein. (287 aa)    
Predicted Functional Partners:
pruA
Delta-1-pyrroline-5-carboxylate dehydrogenase, putative; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.774
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
  0.748
DA2_2180
hpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.745
hyi
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 
 0.727
DA2_2561
4Fe-4S binding domain protein.
    
  0.717
DA2_2781
4Fe-4S binding domain protein.
    
  0.717
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.701
DA2_0149
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein.
    
  0.692
DA2_0227
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
 
  
 0.662
acsm4
Acyl-coenzyme A synthetase ACSM4.
  
 
 0.658
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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