DA2_3126 protein (Desulfovibrio sp. A2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DA2_3126

Aldehyde ferredoxin oxidoreductase, N-terminal domain protein. (589 aa)

Predicted Functional Partners:

DA2_3127

0.981

DA2_3624

0.876

DA2_3308

0.827

rnhA

0.821

DA2_3125

0.781

DA2_3124

0.757

DA2_2070

0.732

DA2_0015

0.692

DA2_0341

0.692

DA2_0350

0.692

Your Current Organism:

Desulfovibrio sp. A2

NCBI taxonomy Id: 298701
Other names: D. sp. A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DA2_0015	DA2_0341	DA2_0015	DA2_0341	Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1.	Formate dehydrogenase subunit beta.	0.441
DA2_0015	DA2_0350	DA2_0015	DA2_0350	Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1.	4Fe-4S binding domain protein.	0.735
DA2_0015	DA2_3126	DA2_0015	DA2_3126	Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1.	Aldehyde ferredoxin oxidoreductase, N-terminal domain protein.	0.692
DA2_0015	DA2_3127	DA2_0015	DA2_3127	Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1.	4Fe-4S binding domain protein.	0.762
DA2_0015	DA2_3624	DA2_0015	DA2_3624	Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1.	Aldehyde ferredoxin oxidoreductase, domains 2 & 3 family protein.	0.704
DA2_0341	DA2_0015	DA2_0341	DA2_0015	Formate dehydrogenase subunit beta.	Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1.	0.441
DA2_0341	DA2_3126	DA2_0341	DA2_3126	Formate dehydrogenase subunit beta.	Aldehyde ferredoxin oxidoreductase, N-terminal domain protein.	0.692
DA2_0341	DA2_3127	DA2_0341	DA2_3127	Formate dehydrogenase subunit beta.	4Fe-4S binding domain protein.	0.430
DA2_0341	DA2_3624	DA2_0341	DA2_3624	Formate dehydrogenase subunit beta.	Aldehyde ferredoxin oxidoreductase, domains 2 & 3 family protein.	0.704
DA2_0350	DA2_0015	DA2_0350	DA2_0015	4Fe-4S binding domain protein.	Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1.	0.735
DA2_0350	DA2_3126	DA2_0350	DA2_3126	4Fe-4S binding domain protein.	Aldehyde ferredoxin oxidoreductase, N-terminal domain protein.	0.692
DA2_0350	DA2_3127	DA2_0350	DA2_3127	4Fe-4S binding domain protein.	4Fe-4S binding domain protein.	0.615
DA2_0350	DA2_3624	DA2_0350	DA2_3624	4Fe-4S binding domain protein.	Aldehyde ferredoxin oxidoreductase, domains 2 & 3 family protein.	0.704
DA2_2070	DA2_3126	DA2_2070	DA2_3126	Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Aldehyde ferredoxin oxidoreductase, N-terminal domain protein.	0.732
DA2_2070	DA2_3127	DA2_2070	DA2_3127	Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	4Fe-4S binding domain protein.	0.557
DA2_2070	DA2_3624	DA2_2070	DA2_3624	Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Aldehyde ferredoxin oxidoreductase, domains 2 & 3 family protein.	0.779
DA2_3124	DA2_3125	DA2_3124	DA2_3125	Hypothetical protein.	Hypothetical protein.	0.773
DA2_3124	DA2_3126	DA2_3124	DA2_3126	Hypothetical protein.	Aldehyde ferredoxin oxidoreductase, N-terminal domain protein.	0.757
DA2_3124	DA2_3127	DA2_3124	DA2_3127	Hypothetical protein.	4Fe-4S binding domain protein.	0.683
DA2_3124	rnhA	DA2_3124	DA2_3123	Hypothetical protein.	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.773