DA2_3530 protein (Desulfovibrio sp. A2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DA2_3530

N-acetylmuramoyl-L-alanine amidase family protein. (807 aa)

Predicted Functional Partners:

rlpA-2

0.956

DA2_2591

0.948

DA2_3720

0.883

lolA

0.806

DA2_0947

0.763

DA2_1023

0.738

DA2_3669

0.738

folE2

0.717

tolA

0.647

yaeT

0.605

Your Current Organism:

Desulfovibrio sp. A2

NCBI taxonomy Id: 298701
Other names: D. sp. A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DA2_0947	DA2_3530	DA2_0947	DA2_3530	Sporulation related domain protein.	N-acetylmuramoyl-L-alanine amidase family protein.	0.763
DA2_1023	DA2_3530	DA2_1023	DA2_3530	Rhomboid family protein.	N-acetylmuramoyl-L-alanine amidase family protein.	0.738
DA2_2591	DA2_3530	DA2_2591	DA2_3530	lysM domain protein.	N-acetylmuramoyl-L-alanine amidase family protein.	0.948
DA2_2591	DA2_3720	DA2_2591	DA2_3720	lysM domain protein.	Peptidase M23 family protein.	0.550
DA2_2591	rlpA-2	DA2_2591	DA2_1802	lysM domain protein.	Rare lipoA family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.684
DA2_3530	DA2_0947	DA2_3530	DA2_0947	N-acetylmuramoyl-L-alanine amidase family protein.	Sporulation related domain protein.	0.763
DA2_3530	DA2_1023	DA2_3530	DA2_1023	N-acetylmuramoyl-L-alanine amidase family protein.	Rhomboid family protein.	0.738
DA2_3530	DA2_2591	DA2_3530	DA2_2591	N-acetylmuramoyl-L-alanine amidase family protein.	lysM domain protein.	0.948
DA2_3530	DA2_3669	DA2_3530	DA2_3669	N-acetylmuramoyl-L-alanine amidase family protein.	Rhomboid family protein.	0.738
DA2_3530	DA2_3720	DA2_3530	DA2_3720	N-acetylmuramoyl-L-alanine amidase family protein.	Peptidase M23 family protein.	0.883
DA2_3530	folE2	DA2_3530	DA2_1515	N-acetylmuramoyl-L-alanine amidase family protein.	GTP cyclohydrolase folE2; Converts GTP to 7,8-dihydroneopterin triphosphate.	0.717
DA2_3530	lolA	DA2_3530	DA2_0408	N-acetylmuramoyl-L-alanine amidase family protein.	Outer membrane lipocarrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.806
DA2_3530	rlpA-2	DA2_3530	DA2_1802	N-acetylmuramoyl-L-alanine amidase family protein.	Rare lipoA family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.956
DA2_3530	tolA	DA2_3530	DA2_2794	N-acetylmuramoyl-L-alanine amidase family protein.	Protein TolA.	0.647
DA2_3530	yaeT	DA2_3530	DA2_3529	N-acetylmuramoyl-L-alanine amidase family protein.	Outer membrane assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.605
DA2_3669	DA2_3530	DA2_3669	DA2_3530	Rhomboid family protein.	N-acetylmuramoyl-L-alanine amidase family protein.	0.738
DA2_3720	DA2_2591	DA2_3720	DA2_2591	Peptidase M23 family protein.	lysM domain protein.	0.550
DA2_3720	DA2_3530	DA2_3720	DA2_3530	Peptidase M23 family protein.	N-acetylmuramoyl-L-alanine amidase family protein.	0.883
folE2	DA2_3530	DA2_1515	DA2_3530	GTP cyclohydrolase folE2; Converts GTP to 7,8-dihydroneopterin triphosphate.	N-acetylmuramoyl-L-alanine amidase family protein.	0.717
lolA	DA2_3530	DA2_0408	DA2_3530	Outer membrane lipocarrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	N-acetylmuramoyl-L-alanine amidase family protein.	0.806