STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA2_36034Fe-4S ferredoxin, iron-sulfur binding domain protein. (281 aa)    
Predicted Functional Partners:
DA2_3602
Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
   
 0.941
DA2_3604
Radical SAM superfamily protein.
  
  
 0.788
DA2_3161
Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
  
 0.741
DA2_2950
Putative membrane protein.
  
  
 0.691
DA2_2741
4Fe-4S binding domain protein.
 
     0.540
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.532
DA2_2828
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 
 0.510
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.479
DA2_1732
napC/NirT cytochrome c family protein.
  
 
 0.427
DA2_2745
napC/NirT cytochrome c family protein.
  
 
 0.427
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.