DA2_3603 protein (Desulfovibrio sp. A2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DA2_3603

4Fe-4S ferredoxin, iron-sulfur binding domain protein. (281 aa)

Predicted Functional Partners:

DA2_3602

0.941

DA2_3604

0.785

DA2_3161

0.738

DA2_2950

0.557

DA2_2741

0.540

hcp

0.510

nifU

0.451

nifJ

0.437

DA2_2828

0.417

DA2_1732

0.409

Your Current Organism:

Desulfovibrio sp. A2

NCBI taxonomy Id: 298701
Other names: D. sp. A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DA2_1732	DA2_2741	DA2_1732	DA2_2741	napC/NirT cytochrome c family protein.	4Fe-4S binding domain protein.	0.501
DA2_1732	DA2_2950	DA2_1732	DA2_2950	napC/NirT cytochrome c family protein.	Putative membrane protein.	0.612
DA2_1732	DA2_3161	DA2_1732	DA2_3161	napC/NirT cytochrome c family protein.	Tat (twin-arginine translocation) pathway signal sequence domain protein.	0.825
DA2_1732	DA2_3603	DA2_1732	DA2_3603	napC/NirT cytochrome c family protein.	4Fe-4S ferredoxin, iron-sulfur binding domain protein.	0.409
DA2_1732	hcp	DA2_1732	DA2_1114	napC/NirT cytochrome c family protein.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.850
DA2_1732	nifJ	DA2_1732	DA2_2135	napC/NirT cytochrome c family protein.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.	0.404
DA2_2741	DA2_1732	DA2_2741	DA2_1732	4Fe-4S binding domain protein.	napC/NirT cytochrome c family protein.	0.501
DA2_2741	DA2_2828	DA2_2741	DA2_2828	4Fe-4S binding domain protein.	Pyridine nucleotide-disulfide oxidoreductase family protein.	0.902
DA2_2741	DA2_3161	DA2_2741	DA2_3161	4Fe-4S binding domain protein.	Tat (twin-arginine translocation) pathway signal sequence domain protein.	0.923
DA2_2741	DA2_3603	DA2_2741	DA2_3603	4Fe-4S binding domain protein.	4Fe-4S ferredoxin, iron-sulfur binding domain protein.	0.540
DA2_2741	hcp	DA2_2741	DA2_1114	4Fe-4S binding domain protein.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.475
DA2_2741	nifJ	DA2_2741	DA2_2135	4Fe-4S binding domain protein.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.	0.999
DA2_2741	nifU	DA2_2741	DA2_3103	4Fe-4S binding domain protein.	fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.	0.756
DA2_2828	DA2_2741	DA2_2828	DA2_2741	Pyridine nucleotide-disulfide oxidoreductase family protein.	4Fe-4S binding domain protein.	0.902
DA2_2828	DA2_2950	DA2_2828	DA2_2950	Pyridine nucleotide-disulfide oxidoreductase family protein.	Putative membrane protein.	0.922
DA2_2828	DA2_3161	DA2_2828	DA2_3161	Pyridine nucleotide-disulfide oxidoreductase family protein.	Tat (twin-arginine translocation) pathway signal sequence domain protein.	0.963
DA2_2828	DA2_3603	DA2_2828	DA2_3603	Pyridine nucleotide-disulfide oxidoreductase family protein.	4Fe-4S ferredoxin, iron-sulfur binding domain protein.	0.417
DA2_2828	hcp	DA2_2828	DA2_1114	Pyridine nucleotide-disulfide oxidoreductase family protein.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.773
DA2_2828	nifJ	DA2_2828	DA2_2135	Pyridine nucleotide-disulfide oxidoreductase family protein.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.	0.948
DA2_2828	nifU	DA2_2828	DA2_3103	Pyridine nucleotide-disulfide oxidoreductase family protein.	fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.	0.940