STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCHL1Ubiquitin carboxyl-terminal hydrolase. (224 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin-60S ribosomal protein L40.
    
 0.815
NEDD8
Ubiquitin-like protein Nedd8.
   
 0.804
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.802
FUS1
Ubiquitin-60S ribosomal protein L40.
    
 0.802
UBA3
NEDD8-activating enzyme E1 catalytic subunit.
   
 0.764
LOC110471805
Ubiquitin.
    
 0.754
PSMD14
26S proteasome non-ATPase regulatory subunit 14.
   
 0.753
SENP8
Sentrin-specific protease 8.
    
 0.728
ZFAND4
AN1-type zinc finger protein 4.
    
 0.728
ENSLSDP00000008068
annotation not available
    
 0.714
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.