STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM33Transmembrane protein 33. (251 aa)    
Predicted Functional Partners:
SEC13
Protein SEC13; Belongs to the WD repeat SEC13 family.
      
 0.562
NUP133
Nuclear pore complex protein Nup133.
    
 
 0.548
RNF26
RING finger protein 26.
    
 
 0.540
BEND4
BEN domain-containing protein 4.
      
 0.538
SLC30A9
Zinc transporter 9.
   
  
 0.532
TMEM43
Transmembrane protein 43.
      
 0.504
FAM8A1
Protein FAM8A1.
      
 0.504
CHORDC1
Cysteine and histidine-rich domain-containing protein 1.
   
  
 0.488
ZBTB2
Zinc finger and BTB domain-containing protein 2.
    
 
 0.451
RTN3
Reticulon.
    
 
 0.448
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.