STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000000042annotation not available (89 aa)    
Predicted Functional Partners:
CCDC39
Coiled-coil domain-containing protein 39.
   
 
 0.821
CCDC40
Coiled-coil domain-containing protein 40.
    
 
 0.809
RSPH1
Radial spoke head 1.
   
 
 0.783
IQCD
IQ domain-containing protein D.
   
 
 0.750
TSSK6
Testis-specific serine/threonine-protein kinase 6; Belongs to the protein kinase superfamily.
   
 
 0.736
NME8
Thioredoxin domain-containing protein 3; Belongs to the NDK family.
    
   0.718
ARMC4
Armadillo repeat-containing protein 4.
   
 
 0.717
WDR90
WD repeat-containing protein 90.
    
   0.717
CFAP44
Cilia-and flagella-associated protein 44.
    
 
 0.717
CCDC63
Coiled-coil domain-containing protein 63.
   
 
 0.702
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.