Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ASCC3Activating signal cointegrator 1 complex subunit 3. (2207 aa)    
Predicted Functional Partners:
ASCC2
Activating signal cointegrator 1 complex subunit 2.
    
 0.999
TRIP4
Activating signal cointegrator 1.
   
 0.998
ASCC1
Activating signal cointegrator 1 complex subunit 1.
    
 0.987
ALKBH3
Alpha-ketoglutarate-dependent dioxygenase alkB 3.
    
 0.957
LOC110483026
Zinc finger protein 598.
    
 0.874
ZNF598
Zinc finger protein 598.
    
 0.874
RPS3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.789
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.770
DKC1
H/ACA ribonucleoprotein complex subunit 4.
    
   0.738
RACK1
Guanine nucleotide-binding protein subunit beta-2-like 1.
   
 
 0.735
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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