Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GIPC3PDZ domain-containing protein GIPC3. (95 aa)    
Predicted Functional Partners:
MYO6
Unconventional myosin-VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.912
APPL1
DCC-interacting protein 13-alpha.
   
 
 0.878
APPL2
DCC-interacting protein 13-beta.
   
 
 0.878
BRCA2
Breast cancer type 2 susceptibility.
      
 0.835
TGFB2
Transforming growth factor beta; Belongs to the TGF-beta family.
     
  0.828
TGFBR3
Transforming growth factor beta receptor type 3.
    
 0.768
NRP1
Neuropilin; Belongs to the neuropilin family.
    
 
 0.726
ESPN
Espin.
      
 0.684
MFSD12
Major facilitator superfamily domain-containing protein 12.
      
 0.663
BTBD19
BTB/POZ domain-containing protein 19.
    
   0.656
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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