STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSTM5V-set and transmembrane domain-containing protein 5. (194 aa)    
Predicted Functional Partners:
GPR176
Putative G-protein coupled receptor 176.
      
 0.767
GPR75
Putative G-protein coupled receptor 75.
      
 0.760
SMCO4
Single-pass membrane and coiled-coil domain-containing protein 4.
      
 0.721
ANKRD55
Ankyrin repeat domain-containing protein 55.
      
 0.713
MED17
Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
      
 0.693
CUNH11orf54
Ester hydrolase C11orf54.
      
 0.666
LOC110478386
Transmembrane 4 L6 family member 1.
      
 0.663
GALR1
Galanin receptor type 1; Belongs to the G-protein coupled receptor 1 family.
   
  
 0.647
DHRS7C
Dehydrogenase/reductase SDR family member 7C; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.567
LOC110484408
Galanin receptor type 1; Belongs to the G-protein coupled receptor 1 family.
   
  
 0.533
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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