Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZNF770Zinc finger protein 770. (730 aa)    
Predicted Functional Partners:
NOL12
Nucleolar protein 12.
    
   0.711
NIFK
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
    
   0.604
N4BP2
NEDD4-binding protein 2.
    
 
 0.568
MYSM1
Histone H2A deubiquitinase MYSM1.
    
 0.559
TRIM33
E3 ubiquitin-protein ligase TRIM33.
   
  0.537
RNF166
E3 ubiquitin-protein ligase RNF166.
   
 0.513
E2F3
Transcription factor E2F3.
    
 
 0.511
DCPS
M7GpppX diphosphatase.
      
 0.508
ZC3HC1
NIPA-like protein.
      
 0.451
TRIM24
Transcription intermediary factor 1-alpha.
   
  0.425
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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