TTC32 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TTC32

Tetratricopeptide repeat protein 32. (136 aa)

Predicted Functional Partners:

LEO1

0.650

WDR35

0.596

CHST9

0.566

TP53I3

0.564

COMMD4

0.555

BBS9

0.524

INTS13

0.499

BBS7

0.469

ENSLSDP00000020587

0.468

TTC8

0.462

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS7	BBS9	ENSLSDP00000021608	ENSLSDP00000003992	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Protein PTHB1.	0.999
BBS7	TTC32	ENSLSDP00000021608	ENSLSDP00000000083	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Tetratricopeptide repeat protein 32.	0.469
BBS7	TTC8	ENSLSDP00000021608	ENSLSDP00000005215	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Tetratricopeptide repeat protein 8.	0.999
BBS9	BBS7	ENSLSDP00000003992	ENSLSDP00000021608	Protein PTHB1.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.999
BBS9	TTC32	ENSLSDP00000003992	ENSLSDP00000000083	Protein PTHB1.	Tetratricopeptide repeat protein 32.	0.524
BBS9	TTC8	ENSLSDP00000003992	ENSLSDP00000005215	Protein PTHB1.	Tetratricopeptide repeat protein 8.	0.998
BBS9	WDR35	ENSLSDP00000003992	ENSLSDP00000000062	Protein PTHB1.	WD repeat-containing protein 35.	0.410
CHST9	TTC32	ENSLSDP00000004268	ENSLSDP00000000083	Carbohydrate sulfotransferase.	Tetratricopeptide repeat protein 32.	0.566
COMMD4	ENSLSDP00000020587	ENSLSDP00000014130	ENSLSDP00000020587	COMM domain-containing protein 4.	annotation not available	0.417
COMMD4	TTC32	ENSLSDP00000014130	ENSLSDP00000000083	COMM domain-containing protein 4.	Tetratricopeptide repeat protein 32.	0.555
ENSLSDP00000020587	COMMD4	ENSLSDP00000020587	ENSLSDP00000014130	annotation not available	COMM domain-containing protein 4.	0.417
ENSLSDP00000020587	TTC32	ENSLSDP00000020587	ENSLSDP00000000083	annotation not available	Tetratricopeptide repeat protein 32.	0.468
INTS13	TTC32	ENSLSDP00000009182	ENSLSDP00000000083	Protein asunder.	Tetratricopeptide repeat protein 32.	0.499
LEO1	TTC32	ENSLSDP00000022885	ENSLSDP00000000083	RNA polymerase-associated protein LEO1.	Tetratricopeptide repeat protein 32.	0.650
LEO1	TTC8	ENSLSDP00000022885	ENSLSDP00000005215	RNA polymerase-associated protein LEO1.	Tetratricopeptide repeat protein 8.	0.650
TP53I3	TTC32	ENSLSDP00000003224	ENSLSDP00000000083	Quinone oxidoreductase PIG3.	Tetratricopeptide repeat protein 32.	0.564
TTC32	BBS7	ENSLSDP00000000083	ENSLSDP00000021608	Tetratricopeptide repeat protein 32.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.469
TTC32	BBS9	ENSLSDP00000000083	ENSLSDP00000003992	Tetratricopeptide repeat protein 32.	Protein PTHB1.	0.524
TTC32	CHST9	ENSLSDP00000000083	ENSLSDP00000004268	Tetratricopeptide repeat protein 32.	Carbohydrate sulfotransferase.	0.566
TTC32	COMMD4	ENSLSDP00000000083	ENSLSDP00000014130	Tetratricopeptide repeat protein 32.	COMM domain-containing protein 4.	0.555