STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQRIntron-binding protein aquarius. (1466 aa)    
Predicted Functional Partners:
XAB2
Pre-mRNA-splicing factor SYF1.
   
 0.997
CRNKL1
Crooked neck-like protein 1.
   
 0.996
PPIE
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
    
 0.995
PRPF19
Pre-mRNA-processing factor 19.
    
 0.995
ZNF830
Zinc finger protein 830.
    
 0.995
RBM22
Pre-mRNA-splicing factor RBM22.
    
 0.994
ISY1
Pre-mRNA-splicing factor ISY1.
    
 0.991
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
 0.961
ENSLSDP00000001823
annotation not available
    
 0.955
SNW1
SNW domain-containing protein 1.
    
 0.955
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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