STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM129Transmembrane protein 129. (362 aa)    
Predicted Functional Partners:
DERL1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.949
UBE2J2
Ubiquitin-conjugating enzyme E2 J2.
    
 0.806
SLBP
Histone RNA hairpin-binding protein.
 
    
 0.728
CCDC102A
Coiled-coil domain-containing protein 102A.
      
 0.727
RNF185
E3 ubiquitin-protein ligase RNF185.
      
 0.683
DENND4A
C-myc promoter-binding protein.
      
 0.676
FAM53A
Protein FAM53A.
      
 0.670
BMS1
Ribosome biogenesis protein BMS1.
      
 0.663
SEL1L
Protein sel-1 1.
    
 
 0.616
C1QTNF12
Adipolin.
    
 0.596
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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