STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GGA2ADP-ribosylation factor-binding protein GGA2. (360 aa)    
Predicted Functional Partners:
RABGEF1
Rab5 GDP/GTP exchange factor.
    
 0.957
SORL1
Sortilin-related receptor.
    
 
 0.899
RABEP1
Rab GTPase-binding effector protein 1.
    
 0.833
IGF2R
Cation-independent mannose-6-phosphate receptor.
    
 
 0.802
H1-0
Histone H5.
      
 0.671
BACE1
Beta-secretase 1; Belongs to the peptidase A1 family.
    
 0.585
BACE2
Beta-secretase 2; Belongs to the peptidase A1 family.
    
 0.585
SORCS2
VPS10 domain-containing receptor SorCS2.
    
 
 0.577
SORCS1
VPS10 domain-containing receptor SorCS1.
    
 
 0.567
SORCS3
VPS10 domain-containing receptor SorCS3.
    
 
 0.567
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.