STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXA7Homeobox protein Hox-A7. (219 aa)    
Predicted Functional Partners:
HOXA6
Homeobox protein Hox-A6.
   
 
 0.932
HOXB3
Homeobox protein Hox-B3.
   
   0.893
HOXB6
Homeobox protein Hox-B6.
   
   0.829
HOXB7
Homeobox protein HoxA/B7.
   
 
 0.794
HOXD4
Homeobox protein Hox-D4.
   
   0.720
HOXC6
Homeobox protein Hox-C6.
   
   0.692
HOXA9
Homeobox protein Hox-A9.
   
 
 0.653
KMT2A
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.
    
 
 0.571
HOXA10
Homeobox protein Hox-A10.
   
 
 0.555
HOXA3
Homeobox protein HoxA/B/D3.
   
  
 0.527
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.