Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXA5Homeobox protein Hox-A5. (270 aa)    
Predicted Functional Partners:
LPCAT1
Lysophosphatidylcholine acyltransferase 1.
      
 0.874
SLC6A2
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.873
HOXA2
Homeobox protein HoxA/B2.
   
 
 0.675
NFATC2
Nuclear factor of activated T-cells, cytoplasmic 2.
      
 0.671
NFATC2-2
Nuclear factor of activated T-cells, cytoplasmic 2.
      
 0.671
CLPTM1
Cleft lip and palate transmembrane protein 1.
      
 0.660
CLPTM1L
Cleft lip and palate transmembrane protein 1-like protein.
      
 0.660
HOXA3
Homeobox protein HoxA/B/D3.
   
  
 0.655
HOXD10
Homeobox protein Hox-D10.
    
 
 0.620
FOXC1
Forkhead box C1-A.
    
 0.606
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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