STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXA5Homeobox protein Hox-A5. (270 aa)    
Predicted Functional Partners:
FOXC1
Forkhead box C1-A.
    
 0.683
NFATC2
Nuclear factor of activated T-cells, cytoplasmic 2.
      
 0.666
NFATC2-2
Nuclear factor of activated T-cells, cytoplasmic 2.
      
 0.666
HOXA3
Homeobox protein HoxA/B/D3.
   
  
0.657
HOXD3
Homeobox protein Hox-D3.
   
  
0.570
FOXC2
Forkhead box protein C2.
    
 0.526
SLC6A2
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
   
  
 0.517
LPCAT1
Lysophosphatidylcholine acyltransferase 1.
      
 0.465
CLPTM1L
Cleft lip and palate transmembrane protein 1-like protein.
      
 0.465
HOXB3
Homeobox protein Hox-B3.
  
   
0.440
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.