STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIMKLBBeta-citrylglutamate synthase B. (386 aa)    
Predicted Functional Partners:
NAT8L
N-acetylaspartate synthetase.
     
 0.957
ASPA
Aspartoacylase.
     
 0.938
FOLH1
Glutamate carboxypeptidase 2.
     
 0.905
CS
Citrate synthase; Belongs to the citrate synthase family.
    
 0.859
IDH3A
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.854
LOC110482557
Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial.
    
 0.853
IDH3B
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.853
OGDH
2-oxoglutarate dehydrogenase, mitochondrial.
   
 0.844
MDH2
Malate dehydrogenase.
    
 0.833
OGDHL
2-oxoglutarate dehydrogenase-like, mitochondrial.
   
 0.831
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.