PTRH1 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PTRH1

Uncharacterized protein. (184 aa)

Predicted Functional Partners:

GATB

0.808

OLA1

0.778

NDUFA4L2

0.703

PPP1R26

0.695

PPA2

0.694

CABP4

0.675

RNF170

0.565

SLC25A27

0.563

PITPNM1

0.562

TOR2A

0.554

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CABP4	PITPNM1	ENSLSDP00000004986	ENSLSDP00000011301	Calcium-binding protein 4.	Membrane-associated phosphatidylinositol transfer protein 1.	0.658
CABP4	PPP1R26	ENSLSDP00000004986	ENSLSDP00000003969	Calcium-binding protein 4.	Protein phosphatase 1 regulatory subunit 26.	0.688
CABP4	PTRH1	ENSLSDP00000004986	ENSLSDP00000001029	Calcium-binding protein 4.	Uncharacterized protein.	0.675
CABP4	RNF170	ENSLSDP00000004986	ENSLSDP00000015976	Calcium-binding protein 4.	E3 ubiquitin-protein ligase RNF170.	0.589
CABP4	SLC25A27	ENSLSDP00000004986	ENSLSDP00000002955	Calcium-binding protein 4.	Mitochondrial uncoupling protein 4; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.587
CABP4	TOR2A	ENSLSDP00000004986	ENSLSDP00000001018	Calcium-binding protein 4.	Torsin.	0.565
GATB	PTRH1	ENSLSDP00000011000	ENSLSDP00000001029	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.	Uncharacterized protein.	0.808
NDUFA4L2	OLA1	ENSLSDP00000023222	ENSLSDP00000015152	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.413
NDUFA4L2	PTRH1	ENSLSDP00000023222	ENSLSDP00000001029	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2.	Uncharacterized protein.	0.703
OLA1	NDUFA4L2	ENSLSDP00000015152	ENSLSDP00000023222	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2.	0.413
OLA1	PTRH1	ENSLSDP00000015152	ENSLSDP00000001029	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein.	0.778
PITPNM1	CABP4	ENSLSDP00000011301	ENSLSDP00000004986	Membrane-associated phosphatidylinositol transfer protein 1.	Calcium-binding protein 4.	0.658
PITPNM1	PPP1R26	ENSLSDP00000011301	ENSLSDP00000003969	Membrane-associated phosphatidylinositol transfer protein 1.	Protein phosphatase 1 regulatory subunit 26.	0.591
PITPNM1	PTRH1	ENSLSDP00000011301	ENSLSDP00000001029	Membrane-associated phosphatidylinositol transfer protein 1.	Uncharacterized protein.	0.562
PITPNM1	RNF170	ENSLSDP00000011301	ENSLSDP00000015976	Membrane-associated phosphatidylinositol transfer protein 1.	E3 ubiquitin-protein ligase RNF170.	0.581
PITPNM1	SLC25A27	ENSLSDP00000011301	ENSLSDP00000002955	Membrane-associated phosphatidylinositol transfer protein 1.	Mitochondrial uncoupling protein 4; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.581
PITPNM1	TOR2A	ENSLSDP00000011301	ENSLSDP00000001018	Membrane-associated phosphatidylinositol transfer protein 1.	Torsin.	0.484
PPA2	PTRH1	ENSLSDP00000010990	ENSLSDP00000001029	Inorganic pyrophosphatase 2, mitochondrial.	Uncharacterized protein.	0.694
PPP1R26	CABP4	ENSLSDP00000003969	ENSLSDP00000004986	Protein phosphatase 1 regulatory subunit 26.	Calcium-binding protein 4.	0.688
PPP1R26	PITPNM1	ENSLSDP00000003969	ENSLSDP00000011301	Protein phosphatase 1 regulatory subunit 26.	Membrane-associated phosphatidylinositol transfer protein 1.	0.591