Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C12orf43Uncharacterized protein C12orf43. (310 aa)    
Predicted Functional Partners:
WSCD2
WSC domain-containing protein 2.
      
 0.627
BABAM1
BRISC and BRCA1-A complex member 1.
   
  
 0.586
RPL4
60S ribosomal protein L4.
      
 0.585
GSC2
Homeobox protein goosecoid-2.
      
 0.582
OAZ1
Ornithine decarboxylase antizyme 1.
      
 0.581
TP53BP1
Tumor suppressor p53-binding protein 1.
      
 0.580
PPM1D
Protein phosphatase 1D.
      
 0.569
AKAP8L
A-kinase anchor protein 8-like; Belongs to the AKAP95 family.
      
 0.567
CTIF
CBP80/20-dependent translation initiation factor.
      
 0.566
ESS2
Protein DGCR14.
      
 0.545
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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