STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNF1AHepatocyte nuclear factor 1-alpha. (634 aa)    
Predicted Functional Partners:
PCBD1
Pterin-4-alpha-carbinolamine dehydratase.
    
 
 0.935
PCBD2
Pterin-4-alpha-carbinolamine dehydratase 2.
    
 
 0.755
HNF1B
Hepatocyte nuclear factor 1-beta.
  
 
0.721
SLC2A2
Solute carrier family 2, facilitated glucose transporter member 2; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
 
 0.634
HNF4G
Hepatocyte nuclear factor 4-gamma.
   
 0.598
HNF4A
Hepatocyte nuclear factor 4-alpha.
   
 0.598
ABCD2
ATP-binding cassette sub-family D member 2.
      
 0.556
PDX1
Pancreas/duodenum homeobox protein 1.
   
  
 0.517
ABCC8
ATP-binding cassette sub-family C member 8.
   
  
 0.491
PTF1A
Pancreas transcription factor 1 subunit alpha.
     
 0.480
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.