Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH2G patch domain-containing protein 2. (507 aa)    
Predicted Functional Partners:
RRP15
RRP15-like protein.
      
 0.874
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
    
 0.846
PINX1
PIN2/TERF1-interacting telomerase inhibitor 1.
    
 
 0.770
DDX10
RNA helicase.
   
 0.758
DDX18
RNA helicase.
    
  0.735
BYSL
Bystin.
    
 
 0.724
NOL6
Nucleolar protein 6.
   
 
 0.722
CCNL1
Cyclin-L1; Belongs to the cyclin family.
   
   0.715
UTP25
Digestive organ expansion factor.
    
 
 0.712
UTP3
Something about silencing protein 10 isoform X1.
   
   0.710
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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