Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SF3B1Splicing factor 3B subunit 1. (1301 aa)    
Predicted Functional Partners:
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.999
SF3B2
Splicing factor 3B subunit 2.
   
 0.999
DDX42
ATP-dependent RNA helicase DDX42.
   
 0.999
SF3B3
Splicing factor 3B subunit 3.
   
 0.999
PHF5A
PHD finger-like domain-containing protein 5A.
   
 0.998
SF3B6
Splicing factor 3B subunit 6.
   
 0.997
SF3B4
Splicing factor 3B subunit 4.
    
 0.997
SF3A2
Splicing factor 3A subunit 2.
   
 0.993
SF3A1
Splicing factor 3A subunit 1.
   
 0.991
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 0.988
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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