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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR3AProtein EFR3 A. (823 aa)    
Predicted Functional Partners:
PI4KA
Phosphatidylinositol 4-kinase alpha; Belongs to the PI3/PI4-kinase family.
   
 
 0.829
TTC7A
Tetratricopeptide repeat protein 7A.
   
 
 0.770
TTC7B
Tetratricopeptide repeat protein 7B.
   
 
 0.770
SEMA3E
Semaphorin-3E; Belongs to the semaphorin family.
      
 0.654
FAM126A
Hyccin.
      
 0.624
PI4KB
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
      
 0.564
DOK4
Docking protein 4.
   
  
 0.519
LOC110480953
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
    
 
 0.518
LOC110471697
40S ribosomal protein S3a.
    
 
 0.518
SEMA3G
Semaphorin-3G; Belongs to the semaphorin family.
      
 0.506
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.