Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TRUB2Putative tRNA pseudouridine synthase 2. (342 aa)    
Predicted Functional Partners:
FASTKD2
FAST kinase domain-containing protein 2.
   
 0.968
RCC1L
Williams-Beuren syndrome chromosomal region 16.
    
 0.940
YARS2
Tyrosine--tRNA ligase.
  
 
 0.923
DDX28
Putative ATP-dependent RNA helicase DDX28.
  
 
 0.917
MTERF3
Transcription termination factor 3, mitochondrial.
   
 0.901
PUS7L
Pseudouridylate synthase 7-like protein.
   
  
 0.886
PUSL1
tRNA pseudouridine synthase.
   
 0.821
NOP58
Nucleolar protein 58.
  
 
 0.771
PUS1
tRNA pseudouridine synthase A, mitochondrial.
   
 0.762
PUS3
tRNA pseudouridine(38/39) synthase.
   
 0.761
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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