Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000001121annotation not available (144 aa)    
Predicted Functional Partners:
TMEM208
Transmembrane protein 208.
   
 
 0.914
DMC1
DNA meiotic recombinase 1.
   
 
 0.881
SFR1
Swi5-dependent recombination DNA repair protein 1.
   
 
 0.880
XRCC3
DNA repair protein XRCC3.
    
 
 0.845
ENSLSDP00000006170
annotation not available
    
 
 0.661
RAD51_1
DNA repair protein RAD51 1.
    
 
 0.661
RAD51_0
DNA repair protein RAD51 1.
    
 
 0.661
KNL1
Kinetochore scaffold 1.
   
 
 0.637
RAD51C
DNA repair protein RAD51 3.
   
 
 0.637
SPO11
Meiotic recombination protein SPO11.
   
 
 0.622
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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