STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000001121annotation not available (144 aa)    
Predicted Functional Partners:
TMEM208
Transmembrane protein 208.
   
 
 0.947
DMC1
DNA meiotic recombinase 1.
    
 
 0.775
SFR1
Swi5-dependent recombination DNA repair protein 1.
    
 
 0.756
XRCC3
DNA repair protein XRCC3.
    
 
 0.697
MND1
Meiotic nuclear divisions 1.
   
  
 0.597
SPO11
Meiotic recombination protein SPO11.
    
 
 0.582
ENSLSDP00000006170
annotation not available
    
 
 0.566
RAD51_1
DNA repair protein RAD51 1.
    
 
 0.566
RAD51_0
DNA repair protein RAD51 1.
    
 
 0.566
KNL1
Kinetochore scaffold 1.
    
 
 0.549
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.