STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRCPLysosomal Pro-X carboxypeptidase. (479 aa)    
Predicted Functional Partners:
MEP1A
Meprin A subunit.
      
 0.874
C1QBP
Complement C1q binding protein.
     
 0.726
GALNS
N-acetylgalactosamine-6-sulfatase.
   
 
 0.716
EMB
Embigin.
      
 0.713
PTN
Pleiotrophin.
      
 0.712
PREP
Prolyl endopeptidase.
      
 0.691
AADAC
Arylacetamide deacetylase.
   
 0.677
KNG1
Kininogen-1.
   
 0.677
F3
Tissue factor.
      
 0.668
SH3BP5
SH3 domain-binding protein 5.
      
 0.660
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.