Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HHLA1HERV-H LTR-associating 1. (369 aa)    
Predicted Functional Partners:
OC90
Otoconin 90.
      
 0.873
DNAAF4
Dyslexia susceptibility 1 candidate gene 1.
    
 0.598
KLHL23
Kelch-like protein 23.
      
 0.548
TSNAX
Translin-associated protein X.
      
 0.523
BARD1
BRCA1-associated RING domain protein 1.
   
 0.473
ELFN1
Protein ELFN1.
   
 0.462
HHLA2
HERV-H LTR-associating protein 2.
    
 0.416
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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