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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB30Ras-related protein Rab-30. (203 aa)    
Predicted Functional Partners:
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.764
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.760
COG4
Conserved oligomeric Golgi complex subunit 4.
    
 0.740
SMIM7
Small integral membrane protein 7.
    
 0.738
LOC110471134
Rab proteins geranylgeranyltransferase component A 2.
    
 0.719
COG3
Conserved oligomeric Golgi complex subunit 3.
    
 0.688
COG2
Conserved oligomeric Golgi complex subunit 2.
     
 0.682
COG7
Conserved oligomeric Golgi complex subunit 7.
     
 0.639
LOC110480512
Conserved oligomeric Golgi complex subunit 1.
     
 0.633
ENSLSDP00000005058
annotation not available
     
 0.633
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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