Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RAB30Ras-related protein Rab-30. (203 aa)    
Predicted Functional Partners:
COG4
Conserved oligomeric Golgi complex subunit 4.
    
 0.884
AVL9
Late secretory pathway protein AVL9.
      
 0.873
LOC110471134
Rab proteins geranylgeranyltransferase component A 2.
    
 0.856
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.815
COG2
Conserved oligomeric Golgi complex subunit 2.
     
 0.791
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.780
SMIM7
Small integral membrane protein 7.
    
 0.697
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
      
 0.682
RIC1
RAB6A-GEF complex partner protein 1.
      
 0.682
CCDC186
Coiled-coil domain-containing protein 186.
    
 
 0.681
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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