Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBX3Chromobox 3. (190 aa)    
Predicted Functional Partners:
PCGF6
Polycomb group RING finger protein 6.
    
 0.987
L3MBTL2
Lethal(3)malignant brain tumor-like protein 2.
    
 0.981
E2F6
Transcription factor E2F6.
   
 0.980
EHMT1
Histone-lysine N-methyltransferase EHMT1.
    
 0.936
TRIM33
E3 ubiquitin-protein ligase TRIM33.
    
 0.928
ADNP
Activity-dependent neuroprotector homeobox protein.
    
 
 0.927
CHAF1A
Chromatin assembly factor 1 subunit A.
   
 
 0.909
POGZ
Pogo transposable element with ZNF domain.
    
 0.905
ENSLSDP00000008430
annotation not available
    
 0.905
TRIM66
Tripartite motif-containing protein 66.
    
 0.901
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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