STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110467863RNA-binding protein 8A. (178 aa)    
Predicted Functional Partners:
MAGOH
Protein mago nashi 2.
   
 0.976
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.970
UPF2
Regulator of nonsense transcripts 2.
    
 0.964
CASC3
Protein CASC3.
   
 0.963
RNPS1
RNA-binding protein with serine-rich domain 1.
   
 0.956
SRSF3
Serine/arginine-rich splicing factor 3.
   
 0.952
UPF1
Regulator of nonsense transcripts 1.
    
 0.952
SRSF1
Serine/arginine-rich splicing factor 1.
   
 0.949
ALYREF
THO complex subunit 4.
   
 0.930
DDX39B
Spliceosome RNA helicase Ddx39b.
   
 0.928
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.