Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OGFOD1Prolyl 3-hydroxylase OGFOD1. (495 aa)    
Predicted Functional Partners:
RPS23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.965
SYCP3
Synaptonemal complex protein 3.
   
 
 0.932
CPOX
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial.
   
  
 0.697
TLR4
Toll-like receptor 4; Belongs to the Toll-like receptor family.
      
 0.686
JMJD4
JmjC domain-containing protein 4.
      
 0.683
PCK1
Phosphoenolpyruvate carboxykinase, cytosolic [GTP].
     
 0.677
ATXN2
Ataxin-2.
      
 0.660
CAPRIN2
Caprin-2.
      
 0.631
ABCF3
ATP-binding cassette sub-family F member 3.
   
   0.617
CAV3
Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.
      
 0.611
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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