STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGFOD1Prolyl 3-hydroxylase OGFOD1. (495 aa)    
Predicted Functional Partners:
SYCP3
Synaptonemal complex protein 3.
   
 
 0.919
TUFM
Elongation factor Tu, mitochondrial.
   
   0.762
CPOX
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial.
   
  
 0.614
ETF1
Eukaryotic peptide chain release factor subunit 1.
   
 
 0.601
RPS23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.592
CAPRIN2
Caprin-2.
      
 0.536
JMJD4
JmjC domain-containing protein 4.
      
 0.530
OGFOD2
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2.
      
 0.524
POLR3A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.501
BMS1
Ribosome biogenesis protein BMS1.
   
    0.491
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.