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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD44Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B. (1060 aa)    
Predicted Functional Partners:
PPP6C
Serine/threonine-protein phosphatase.
    
 0.741
PPP6R2
Serine/threonine-protein phosphatase 6 regulatory subunit 2.
    
 0.645
PPP6R3
Serine/threonine-protein phosphatase 6 regulatory subunit 3.
    
 0.645
NEDD8
Ubiquitin-like protein Nedd8.
    
  0.457
RELA
Transcription factor p65.
   
 0.447
REL
Proto-oncogene c-Rel.
   
 0.447
COMMD4
COMM domain-containing protein 4.
    
 0.432
IFT81
Intraflagellar transport protein 81.
    
 0.408
IKBKB
Inhibitor of nuclear factor kappa-B kinase subunit beta.
    
 0.403
CHUK
Inhibitor of nuclear factor kappa-B kinase subunit alpha.
    
 0.403
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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