STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD42Ankyrin repeat domain-containing protein 42. (466 aa)    
Predicted Functional Partners:
CCDC90B
Coiled-coil domain-containing protein 90B, mitochondrial.
      
 0.798
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 
 0.705
PPP1R8
Nuclear inhibitor of protein phosphatase 1.
   
  
 0.697
LOC110483196
tRNA selenocysteine 1-associated protein 1-like.
    
 
 0.670
ROS1
Proto-oncogene tyrosine-protein kinase ROS.
    
 0.613
HSDL2
Hydroxysteroid dehydrogenase-like protein 2.
    
 0.600
BOLA1
BolA-like protein 1.
      
 0.594
GGCT
Gamma-glutamylcyclotransferase.
    
 
 0.584
SGTB
Small glutamine-rich tetratricopeptide repeat-containing protein beta.
    
 0.578
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
    
 
 0.576
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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