STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC90BCoiled-coil domain-containing protein 90B, mitochondrial. (252 aa)    
Predicted Functional Partners:
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
      
 0.587
ANKRD42
Ankyrin repeat domain-containing protein 42.
      
 0.584
TRMT1L
TRMT1-like protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.540
RAB30
Ras-related protein Rab-30.
      
 0.539
LRRC66
Leucine-rich repeat-containing protein 66.
      
 0.531
TMX1
Thioredoxin-related transmembrane protein 1.
      
 0.529
FAM32A_0
Protein FAM32A.
   
  
 0.521
FAM32A
Protein FAM32A.
   
  
 0.521
NIPAL2
NIPA-like protein 2.
      
 0.499
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.