Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBFBCore-binding factor subunit beta. (208 aa)    
Predicted Functional Partners:
CUL5
Cullin-5; Belongs to the cullin family.
    
 
 0.964
RUNX3
Runt-related transcription factor 3.
    
 0.907
RUNX1
Runt-related transcription factor 1.
    
 0.907
ENSLSDP00000008165
annotation not available
    
 0.907
RUNX2
Runt-related transcription factor 2.
    
 0.907
ELOB
Transcription elongation factor B polypeptide 2.
    
 
 0.900
ELOC
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 
 0.900
PPM1D
Protein phosphatase 1D.
     
 0.876
AICDA
Single-stranded DNA cytosine deaminase.
    
 
 0.851
NUDCD1
NudC domain-containing protein 1.
    
   0.785
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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