UTP20 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UTP20

Small subunit processome component 20. (2799 aa)

Predicted Functional Partners:

PDCD11

0.999

NOP14

0.998

HEATR1

0.998

UTP14A

0.997

NOC4L

0.997

BMS1

0.995

UTP4

0.994

WDR36

0.994

NAT10

0.993

FCF1

0.993

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	FCF1	ENSLSDP00000016471	ENSLSDP00000003522	Ribosome biogenesis protein BMS1.	rRNA-processing protein FCF1.	0.967
BMS1	HEATR1	ENSLSDP00000016471	ENSLSDP00000021442	Ribosome biogenesis protein BMS1.	HEAT repeat-containing protein 1.	0.995
BMS1	NAT10	ENSLSDP00000016471	ENSLSDP00000002914	Ribosome biogenesis protein BMS1.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.996
BMS1	NOC4L	ENSLSDP00000016471	ENSLSDP00000018367	Ribosome biogenesis protein BMS1.	Nucleolar complex protein 4.	0.983
BMS1	NOP14	ENSLSDP00000016471	ENSLSDP00000014721	Ribosome biogenesis protein BMS1.	Nucleolar protein 14.	0.997
BMS1	PDCD11	ENSLSDP00000016471	ENSLSDP00000006836	Ribosome biogenesis protein BMS1.	Protein RRP5.	0.993
BMS1	UTP14A	ENSLSDP00000016471	ENSLSDP00000002223	Ribosome biogenesis protein BMS1.	U3 small nucleolar RNA-associated protein 14 A.	0.991
BMS1	UTP20	ENSLSDP00000016471	ENSLSDP00000001235	Ribosome biogenesis protein BMS1.	Small subunit processome component 20.	0.995
BMS1	UTP4	ENSLSDP00000016471	ENSLSDP00000006266	Ribosome biogenesis protein BMS1.	Cirhin.	0.995
BMS1	WDR36	ENSLSDP00000016471	ENSLSDP00000011400	Ribosome biogenesis protein BMS1.	WD repeat-containing protein 36.	0.997
FCF1	BMS1	ENSLSDP00000003522	ENSLSDP00000016471	rRNA-processing protein FCF1.	Ribosome biogenesis protein BMS1.	0.967
FCF1	HEATR1	ENSLSDP00000003522	ENSLSDP00000021442	rRNA-processing protein FCF1.	HEAT repeat-containing protein 1.	0.956
FCF1	NAT10	ENSLSDP00000003522	ENSLSDP00000002914	rRNA-processing protein FCF1.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.875
FCF1	NOC4L	ENSLSDP00000003522	ENSLSDP00000018367	rRNA-processing protein FCF1.	Nucleolar complex protein 4.	0.989
FCF1	NOP14	ENSLSDP00000003522	ENSLSDP00000014721	rRNA-processing protein FCF1.	Nucleolar protein 14.	0.986
FCF1	PDCD11	ENSLSDP00000003522	ENSLSDP00000006836	rRNA-processing protein FCF1.	Protein RRP5.	0.988
FCF1	UTP14A	ENSLSDP00000003522	ENSLSDP00000002223	rRNA-processing protein FCF1.	U3 small nucleolar RNA-associated protein 14 A.	0.995
FCF1	UTP20	ENSLSDP00000003522	ENSLSDP00000001235	rRNA-processing protein FCF1.	Small subunit processome component 20.	0.993
FCF1	UTP4	ENSLSDP00000003522	ENSLSDP00000006266	rRNA-processing protein FCF1.	Cirhin.	0.951
FCF1	WDR36	ENSLSDP00000003522	ENSLSDP00000011400	rRNA-processing protein FCF1.	WD repeat-containing protein 36.	0.930