STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODC1Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (460 aa)    
Predicted Functional Partners:
SRM
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.981
OAZ1
Ornithine decarboxylase antizyme 1.
    
 0.980
ARG2
Arginase.
  
 
 0.967
AGMAT
Agmatinase, mitochondrial.
  
 
 0.967
OAT
Ornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.964
SAT1
Diamine acetyltransferase 1.
    
 0.953
AOC1
Amine oxidase.
   
 
 0.917
OAZ2
Ornithine decarboxylase antizyme 2.
    
 0.879
SMS
Spermine synthase.
  
 0.803
AASS
Alpha-aminoadipic semialdehyde synthase, mitochondrial.
  
 
 0.790
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.