STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110478662CCAAT/enhancer-binding protein zeta. (879 aa)    
Predicted Functional Partners:
NOC2L
Nucleolar complex protein 2.
   
 
 0.984
PDCD11
Protein RRP5.
   
 
 0.963
DDX56
Putative ATP-dependent RNA helicase DDX56.
   
 
 0.919
GTPBP4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.915
RPF2
Ribosome production factor 2.
   
 
 0.900
NOC3L
Nucleolar complex protein 3 homolog.
   
 
 0.896
DDX18
RNA helicase.
   
 
 0.892
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.884
RRP12
RRP12-like protein.
   
 
 0.882
P2RY1
P2Y purinoceptor 1; Belongs to the G-protein coupled receptor 1 family.
   
 
 0.879
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.