Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB39BRas-related protein Rab-39B. (213 aa)    
Predicted Functional Partners:
C9orf72
Protein C9orf72.
    
 0.975
SMCR8
Smith-Magenis syndrome chromosomal region candidate gene 8 protein.
    
 0.961
WDR41
WD repeat-containing protein 41.
     
 0.952
SQSTM1
Sequestosome-1.
    
 0.929
LOC110469538
Ras-related protein Rab-39B.
  
 
0.910
RAB8A
Ras-related protein Rab-8A.
  
 
 
0.905
ENSLSDP00000025491
annotation not available
    
 
 0.765
RABGGTA
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.760
RAB3IL1
Guanine nucleotide exchange factor for Rab-3A.
    
 0.641
RAB3IP
Rab-3A-interacting protein.
    
 0.641
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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