Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FMNL3Formin-like protein 3. (1012 aa)    
Predicted Functional Partners:
CDC42
Cell division control protein 42.
   
 0.650
ENSLSDP00000009152
annotation not available
    
 0.581
NPHP4
Nephrocystin-4.
    
 0.581
RHOC
Rho-related GTP-binding protein RhoC.
    
 0.485
RHOA
Transforming protein RhoA.
    
 0.485
RHOB
Rho-related GTP-binding protein RhoB.
    
 0.485
FLCN
Folliculin.
    
 
 0.475
PRPF40A
Pre-mRNA-processing factor 40 A.
    
 0.453
PFN1
Profilin-1.
    
 0.450
PFN2
Profilin; Belongs to the profilin family.
    
 0.450
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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