Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
HPCAL1Hippocalcin-like protein 1. (193 aa)    
Predicted Functional Partners:
PI4KB
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.624
KCNF1
Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.
   
 0.575
CALML3
Calmodulin, striated muscle.
   
 0.503
CALM2
Calmodulin; Belongs to the calmodulin family.
   
 0.503
CALM1
Calmodulin 1.
   
 0.503
KCND2
Potassium voltage-gated channel Shal-related subfamily D member 2.
    
 0.458
KCND3
Potassium voltage-gated channel subfamily D member 3; Belongs to the potassium channel family.
    
 0.458
SLC32A1
Vesicular inhibitory amino acid transporter.
   
  
 0.438
LOC110479693
Vesicular inhibitory amino acid transporter.
   
  
 0.438
LOC110483333
Peripheral plasma membrane protein CASK-like.
    
 0.427
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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