STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HPCAL1Hippocalcin-like protein 1. (193 aa)    
Predicted Functional Partners:
PI4KB
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.693
LOC110483333
Peripheral plasma membrane protein CASK-like.
    
 0.680
ENSLSDP00000001307
annotation not available
    
 0.680
ENSLSDP00000008969
annotation not available
    
 0.680
CASK_1
Peripheral plasma membrane protein CASK.
    
 0.680
ENSLSDP00000009418
annotation not available
    
 0.680
CASK
Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.
    
 0.680
PLPP4
Phosphatidate phosphatase PPAPDC1A.
    
 
 0.676
SV2B
Synaptic vesicle glycoprotein 2B.
   
  
 0.675
CALML3
Calmodulin, striated muscle.
    
0.524
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.