ENSLSDP00000001307 protein (Lonchura striata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLSDP00000001307

annotation not available (60 aa)

Predicted Functional Partners:

APBA1

0.991

APBA3

0.991

APBA2

0.991

GRIN1

0.979

LIN7B

0.958

LIN7C

0.958

LIN7A

0.958

RIMS2

0.947

MYO3B

0.939

MYO3A

0.939

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBA1	ENSLSDP00000001307	ENSLSDP00000016211	ENSLSDP00000001307	Amyloid beta A4 protein-binding family A member 1.	annotation not available	0.991
APBA1	LIN7A	ENSLSDP00000016211	ENSLSDP00000023824	Amyloid beta A4 protein-binding family A member 1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.637
APBA1	LIN7B	ENSLSDP00000016211	ENSLSDP00000016201	Amyloid beta A4 protein-binding family A member 1.	Protein lin-7 B.	0.637
APBA1	LIN7C	ENSLSDP00000016211	ENSLSDP00000018936	Amyloid beta A4 protein-binding family A member 1.	Protein lin-7 homolog C isoform X1.	0.637
APBA1	RIMS2	ENSLSDP00000016211	ENSLSDP00000007268	Amyloid beta A4 protein-binding family A member 1.	Regulating synaptic membrane exocytosis protein 2.	0.949
APBA2	ENSLSDP00000001307	ENSLSDP00000021727	ENSLSDP00000001307	Amyloid beta A4 protein-binding family A member 2.	annotation not available	0.991
APBA2	LIN7A	ENSLSDP00000021727	ENSLSDP00000023824	Amyloid beta A4 protein-binding family A member 2.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.562
APBA2	LIN7B	ENSLSDP00000021727	ENSLSDP00000016201	Amyloid beta A4 protein-binding family A member 2.	Protein lin-7 B.	0.562
APBA2	LIN7C	ENSLSDP00000021727	ENSLSDP00000018936	Amyloid beta A4 protein-binding family A member 2.	Protein lin-7 homolog C isoform X1.	0.562
APBA2	RIMS2	ENSLSDP00000021727	ENSLSDP00000007268	Amyloid beta A4 protein-binding family A member 2.	Regulating synaptic membrane exocytosis protein 2.	0.949
APBA3	ENSLSDP00000001307	ENSLSDP00000020633	ENSLSDP00000001307	Amyloid beta A4 protein-binding family A member 1.	annotation not available	0.991
APBA3	LIN7A	ENSLSDP00000020633	ENSLSDP00000023824	Amyloid beta A4 protein-binding family A member 1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.562
APBA3	LIN7B	ENSLSDP00000020633	ENSLSDP00000016201	Amyloid beta A4 protein-binding family A member 1.	Protein lin-7 B.	0.562
APBA3	LIN7C	ENSLSDP00000020633	ENSLSDP00000018936	Amyloid beta A4 protein-binding family A member 1.	Protein lin-7 homolog C isoform X1.	0.562
APBA3	RIMS2	ENSLSDP00000020633	ENSLSDP00000007268	Amyloid beta A4 protein-binding family A member 1.	Regulating synaptic membrane exocytosis protein 2.	0.949
ENSLSDP00000001307	APBA1	ENSLSDP00000001307	ENSLSDP00000016211	annotation not available	Amyloid beta A4 protein-binding family A member 1.	0.991
ENSLSDP00000001307	APBA2	ENSLSDP00000001307	ENSLSDP00000021727	annotation not available	Amyloid beta A4 protein-binding family A member 2.	0.991
ENSLSDP00000001307	APBA3	ENSLSDP00000001307	ENSLSDP00000020633	annotation not available	Amyloid beta A4 protein-binding family A member 1.	0.991
ENSLSDP00000001307	GRIN1	ENSLSDP00000001307	ENSLSDP00000021018	annotation not available	Glutamate receptor ionotropic, NMDA 1.	0.979
ENSLSDP00000001307	LIN7A	ENSLSDP00000001307	ENSLSDP00000023824	annotation not available	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.958