STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSIG1V-set and immunoglobulin domain containing 1. (331 aa)    
Predicted Functional Partners:
GJB5
Gap junction beta-5 protein.
      
 0.592
ADAM11
Disintegrin and metalloproteinase domain-containing protein 11.
   
  
 0.570
VPS35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
      
 0.545
MAPK15
Mitogen-activated protein kinase.
      
 0.542
IP6K1
Kinase; Belongs to the inositol phosphokinase (IPK) family.
    
   0.511
ZNF341
Zinc finger protein 341.
      
 0.503
KCNE2
Potassium voltage-gated channel subfamily E member 2.
      
 0.476
TCERG1L
Transcription elongation regulator 1 like.
      
 0.470
LRRC8B
Volume-regulated anion channel subunit LRRC8B.
      
 0.467
CACNG2
Voltage-dependent calcium channel gamma-2 subunit; Regulates the trafficking and gating properties of AMPA- selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization. Does not show subunit-specific AMPA receptor regulation and regulates all AMPAR subunits. Thought to stabilize the calcium channel in an inactivated (closed) state; Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily.
      
 0.453
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (22%) [HD]