STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNPS1RNA-binding protein with serine-rich domain 1. (310 aa)    
Predicted Functional Partners:
SAP18
Histone deacetylase complex subunit SAP18.
   
 0.999
UPF2
Regulator of nonsense transcripts 2.
    
 0.994
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.993
UPF1
Regulator of nonsense transcripts 1.
    
 0.984
PNN
Pinin.
   
 0.981
LOC110467861
RNA-binding protein 8A.
   
 0.958
LOC110467863
RNA-binding protein 8A.
   
 0.958
ALYREF
THO complex subunit 4.
   
 0.955
UBE2I
SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family.
   
   0.928
UPF3B
Regulator of nonsense transcripts 3B.
    
 0.904
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.