Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNPS1RNA-binding protein with serine-rich domain 1. (310 aa)    
Predicted Functional Partners:
SAP18
Histone deacetylase complex subunit SAP18.
   
 0.998
PNN
Pinin.
   
 0.997
UPF2
Regulator of nonsense transcripts 2.
    
 0.997
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.993
SRSF1
Serine/arginine-rich splicing factor 1.
   
 0.986
UPF1
Regulator of nonsense transcripts 1.
    
 0.984
ALYREF
THO complex subunit 4.
   
 0.970
U2AF2
Splicing factor U2AF subunit.
   
 0.970
MAGOH
Protein mago nashi 2.
   
 0.959
LOC110467861
RNA-binding protein 8A.
   
 0.956
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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