Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
M6PRCation-dependent mannose-6-phosphate receptor. (292 aa)    
Predicted Functional Partners:
IGF2R
Cation-independent mannose-6-phosphate receptor.
     
 0.997
GGA3
ADP-ribosylation factor-binding protein GGA3.
    
 
 0.932
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
    
 0.802
TOM1
Target of Myb protein 1; Belongs to the TOM1 family.
    
 
 0.709
VAMP3
Vesicle-associated membrane protein 3.
   
 0.659
GCC2
GRIP and coiled-coil domain-containing protein 2.
    
 0.650
GNS
N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.
     
 0.644
VAMP8
Vesicle-associated membrane protein 8.
   
 0.635
CTSZ
Cathepsin Z; Belongs to the peptidase C1 family.
   
 
 0.630
VAMP7
Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.
     
 0.624
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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