Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BPIBactericidal permeability-increasing protein. (63 aa)    
Predicted Functional Partners:
TLR4
Toll-like receptor 4; Belongs to the Toll-like receptor family.
   
 
 0.703
LY96
Lymphocyte antigen 96.
     
 0.687
CD14
Toll-like receptor 2.
   
 
 0.551
SYS1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
     
 0.551
F3
Tissue factor.
      
 0.510
ITGB2
Integrin beta.
   
 
  0.482
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 
  0.472
LYZ
Lysozyme C.
   
 
 0.467
CAMP
Cathelicidin antimicrobial peptide.
   
 
 0.445
MMP1
Interstitial collagenase.
   
 
 0.435
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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