Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RLOC_00000828Uncharacterized protein. (87 aa)    
Predicted Functional Partners:
LMNA
Lamin-A; Belongs to the intermediate filament family.
      
 0.666
CD44
CD44 antigen.
    
 0.638
IFNG
Interferon gamma; Produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma, in addition to having antiviral activity, has important immunoregulatory functions. It is a potent activator of macrophages, it has antiproliferative effects on transformed cells and it can potentiate the antiviral and antitumor effects of the type I interferons.
   
  
 0.597
LOC110471097
Inducible T-cell costimulator.
   
  
 0.588
GATA3
GATA-binding factor 3.
   
 
 0.581
CD5
T-cell differentiation antigen CD6.
   
  
 0.577
CCR7
C-C chemokine receptor type 7; Belongs to the G-protein coupled receptor 1 family.
     
 0.570
CDH1
Cadherin-1; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.566
ENSLSDP00000007059
annotation not available
    
 0.566
CTLA4
Cytotoxic T-lymphocyte protein 4.
      
 0.563
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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