Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KLF11Krueppel-like factor 11. (526 aa)    
Predicted Functional Partners:
SIN3B
Paired amphipathic helix protein Sin3b.
    
 
 0.765
SIN3A
Paired amphipathic helix protein Sin3a.
    
 
 0.765
BLK
Tyrosine-protein kinase.
    
 0.599
SOX6
Transcription factor SOX-6.
    
 
 0.539
HNF1A
Hepatocyte nuclear factor 1-alpha.
      
 0.534
NAB2
NGFI-A-binding protein 2.
    
 0.529
PAX4-2
Paired box protein Pax-4.
    
 0.502
PAX4
Paired box 4.
    
 0.502
LMO2
Rhombotin-2.
    
 
 0.466
PEX6
Peroxisome assembly factor 2.
    
 
 0.454
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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