close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG4ACysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (399 aa)    
Predicted Functional Partners:
GABARAPL2
Gamma-aminobutyric acid receptor-associated protein-like 2.
   
 0.989
GABARAP
Gamma-aminobutyric acid receptor-associated protein.
   
 0.985
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.985
ATG4B
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
  
  
0.914
ATG4C
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
     
0.911
MAP1LC3A
Microtubule-associated proteins 1A/1B light chain 3A.
   
 0.825
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.825
ULK2
Serine/threonine-protein kinase ULK2.
   
 
 0.816
ULK1
Serine/threonine-protein kinase ULK1.
   
 
 0.816
MAP1LC3C
Microtubule-associated proteins 1A/1B light chain 3C.
   
 0.753
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.